Pooling of Urine Specimens for Diagnosis of Asymptomatic Chlamydia Trachomatis Infection by PCR in a Population of Low Frequency, a Cost-Saving Technique for Epidemiological and Screening Programs
DOI:
https://doi.org/10.51253/pafmj.v74iSUPPL-2.10387Keywords:
Chlamydia Trachomatis, Pooling, PCR, Urine.Abstract
Objective: To describe the frequency of Chlamydia trachomatis in local community visiting a tertiary care hospital and to estimate the cost saving achieved as a result of pooling strategy.
Study Design: Cross-sectional study.
Place and Duration of Study: Department of Microbiology, Armed Forces Institute of Pathology, Rawalpindi Pakistan, from Jan 2022 to Jun 2022.
Methodology: A pool of three urine samples was created after individual manual DNA extraction of each sample and tested by RT PCR. Any pool signaling positive was identified and all samples in that pool were retested individually to determine the positive sample. A total of 66 asymptomatic young people including males and females were tested.
Results: The frequency of Chlamydia trachomatis was found to be 7.57%. About 22 pools were created resulting in a 48.0% savings in costs.
Conclusion: The Pooling strategy adopted with the objective of saving test costs resulted in getting timely and reliable results in a resource limited setting. It also provided with the means to keep Sexually Transmitted Infections detection programs going on at various healthcare levels and in screening a larger number of populations.
Downloads
References
Khan MS, Unemo M, Zaman S, Lundborg CS. HIV, STI prevalence and risk behaviours among women selling sex in Lahore, Pakistan. BMC Infect Dis 2011; 11(1): 119.
Reporting and Confidentiality [Internet]. 2021 [cited 2023 May 15]. Available from: https://www.cdc.gov/std/treatment-guidelines/clinical-reporting.htm
Chang SX, Chen KK, Liu XT, Zhang HY, Wu MM, Zhang CL, et al. Prevalence and risk factors of asymptomatic Neisseria gonorrhoeae and Chlamydia trachomatis infections in Shenzhen, China. [Internet]. In Review; 2020 Jan [cited 2023 May 15]. Available from:
https://www.researchsquare.com/article/rs-11098/v1
Sethi S, Roy A, Garg S, Venkatesan L, Bagga R. Detection of Chlamydia trachomatis infections by polymerase chain reaction in asymptomatic pregnant women with special reference to the utility of the pooling of urine specimens. Indian J Med Res 2017; 146(7): 59.
Sabbatucci M, Salfa MC, Regine V, Pezzotti P, Suligoi B. Estimated burden of Chlamydia trachomatis female infection and consequent severe pelvic inflammatory disease, Italy, 2005-2016.
Loeffelholz MJ, Lewinski CA, Silver SR, Purohit AP, Herman SA, Buonagurio DA, et al. Detection of Chlamydia trachomatis in endocervical specimens by polymerase chain reaction. J Clin Microbiol 1992; 30(11): 2847–2851.
Goldschmidt P, Afghani T, Nadeem M, Ali-Khan W, Chaumeil C, De Barbeyrac B. Clinical and Microbiological Diagnosis of Trachoma in Children Living in Rural Areas in the District of Attock, Punjab, Pakistan. Ophthalmic Epidemiol 2006; 13(5): 335–342.
Qayum M, Khalid-bin-Saleem M. PREVALENCE OF CHLAMYDIA TRACHOMATIS AMONG ASYMPTOMATIC WOMEN. J Ayub Med Coll Abbottabad.
Bagheri S, Roghanian R, Golbang N, Golbang P, Nasr Esfahani MH. Molecular Evidence of Chlamydia trachomatis Infection and Its Relation to Miscarriage. Int J Fertil Steril [Internet]. 2018 Jul [cited 2023 Apr 3]; 12(2). https://doi.org/10.22074/ijfs.2018.5184
Pasternack R, Vuorinen P, Kuukankorpi A, Pitkäjärvi T, Miettinen A. Detection of Chlamydia trachomatis infections in women by Amplicor PCR: comparison of diagnostic performance with urine and cervical specimens. J Clin Microbiol 1996 Apr; 34(4): 995–998.
Peeling RW, Toye B, Jessamine P, Gemmill I. Pooling of urine specimens for PCR testing: a cost saving strategy for Chlamydia trachomatis control programmes. Sex Transm Infect 1998; 74(1): 66–70.
Sexually transmitted infections (STIs) [Internet]. [cited 2023 May 15]. Available from: https://www.who.int/news-room/fact-sheets/detail/sexually-transmitted-infections-(stis)
Committee on Prevention and Control of Sexually Transmitted Infections in the United States, Board on Population Health and Public Health Practice, Health and Medicine Division, National Academies of Sciences, Engineering, and Medicine. Sexually Transmitted Infections: Adopting a Sexual Health Paradigm [Internet]. Vermund SH, Geller AB, Crowley JS, editors. Washington, D.C.: National Academies Press; 2021 [cited 2023 May 15]. Available from: https://www.nap.edu/catalog/25955
Mansour Ghanaie M, Reproductive Health Research Center, Department of Obstetrics & Gynecology, Alzahra Hospital, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran, Tabrizian Namin Sh, Reproductive Health Research Center, Department of Obstetrics & Gynecology, Alzahra Hospital, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran, Kazemnejad-Leili E, Departement of Biostatictis, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran, et al. Screening for Chlamydia trachomatis among Infertile Women Using PCR Method. J Ardabil Univ Med Sci. 2019; 19(1): 80–87.
Lan J, Melgers I, Meijer CJ, Walboomers JM, Roosendaal R, Burger C, et al. Prevalence and serovar distribution of asymptomatic cervical Chlamydia trachomatis infections as determined by highly sensitive PCR. J Clin Microbiol 1995; 33(12): 3194–3197.
Gul F, Faiz NR, Raziq F, Malik L, Sherin A, Kazi BM, et al. Frequency of vaginal discharge and its association with various sexually trasmitted diseases in women attending antenatal clinic. J Postgrad Med Inst [Internet]. 2011 Oct 7 [cited 2023 May 15]; 19(1). Available from:
https://jpmi.org.pk/index.php/jpmi/article/view/970
López-Corbeto E, González V, Lugo R, Rivaya B, Casabona J, Matas L, et al. Pooling of urine samples for molecular detection of Chlamydia trachomatis, Neisseria gonorrhoeae and Mycoplasma genitalium as a screening strategy among young adults in Catalonia. Enfermedades Infecc Microbiol Clin Engl Ed. 2020; 38(2): 65–71.
Currie MJ, McNiven M, Yee T, Schiemer U, Bowden FJ. Pooling of Clinical Specimens Prior to Testing for Chlamydia trachomatis by PCR Is Accurate and Cost Saving. J Clin Microbiol. 2004; 42(10): 4866–4867.
Verougstraete N, Verbeke V, De Cannière AS, Simons C, Padalko E, Coorevits L. To pool or not to pool? Screening of Chlamydia trachomatis and Neisseria gonorrhoeae in female sex workers: pooled versus single-site testing. Sex Transm Infect. 2020; 96(6): 417–421.
Hussen S, Wachamo D, Yohannes Z, Tadesse E. Prevalence of chlamydia trachomatis infection among reproductive age women in sub Saharan Africa: a systematic review and meta-analysis. BMC Infect Dis 2018; 18(1): 596.
Chamani-Ta L, . MJT, . MMAA, . AMJ, . HZ, . JG, et al. Chlamydia trachomatis Prevalence in Iranian Women Attending Obstetrics and Gynaecology Clinics. Pak J Biol Sci 2007; 10(24): 4490–4494.
STI Screening Recommendations [Internet]. 2022 [cited 2023 May 15]. Available from: https://www.cdc.gov/std/treatment-guidelines/screening-recommendations.htm
Rubina Ghani, Kashif Nisar, Hasan Ali, Saara Ahmad. Identification of 11 std Pathogens in Semen Using Polymerase Chain Reaction (pcr) and “Flow-through” Hybridization Technology. J Life Sci [Internet]. 2016 Feb 28 [cited 2023 May 15];10(2). Available from:
http://www.davidpublisher.com/index.php/Home/Article/index?id=25912.html
Chlamydial Infections - STI Treatment Guidelines [Internet]. 2022 [cited 2023 May 15]. Available from:
https://www.cdc.gov/std/treatment-guidelines/chlamydia.htm
Hu XM, Xu JX, Jiang LX, Deng LR, Gu ZM, Xie XY, et al. Design and Evaluation of a Novel Multiplex Real-Time PCR Melting Curve Assay for the Simultaneous Detection of Nine Sexually Transmitted Disease Pathogens in Genitourinary Secretions. Front Cell Infect Microbiol 2019; 9: 382.
Downloads
Published
Issue
Section
License
Copyright (c) 2024 Nawwal Naeem Chaudhary, Irfan Ali Mirza, Umar Khurshid, Ammarah Iqbal Muhammad, Shazia Gullalai, Sakeenah Hussain Naqvi

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.